Genomic and Transcriptomic Landscape of Triple-Negative Breast Cancers: Subtypes and Treatment Strategies

References

Page 1

	Year	Citations
Moderated estimation of fold change and dispersion for RNA-seq data with DESeq2 Michael I. Love, Wolfgang Huber, Simon Anders Genome biology	2014	94.7K
Gene set enrichment analysis: A knowledge-based approach for interpreting genome-wide expression profiles Aravind Subramanian, Pablo Tamayo, Vamsi K. Mootha, Proceedings of the National Academy of Sciences GeneticsGenomicsGene RecognitionBioinformatics DatabaseGene Expression Profiling	2005	54.5K
The Genome Analysis Toolkit: A MapReduce framework for analyzing next-generation DNA sequencing data Aaron McKenna, Matthew G. Hanna, Eric Banks, Genome Research	2010	28.9K
GSVA: gene set variation analysis for microarray and RNA-Seq data Sonja Hänzelmann, Robert Castelo, Justin Guinney BMC Bioinformatics	2013	15.6K
ANNOVAR: functional annotation of genetic variants from high-throughput sequencing data Kai Wang, Man Li, Håkon Håkonarson Nucleic Acids Research GeneticsGenomicsGenetic MedicineClinical GeneticsAnnotation Databases	2010	15.1K
Robust enumeration of cell subsets from tissue expression profiles Aaron M. Newman, Chih Long Liu, Michael R. Green, Nature Methods EngineeringMedicineComputational BiologyRobust EnumerationGene Expression Profiling	2015	13.6K
Differential gene and transcript expression analysis of RNA-seq experiments with TopHat and Cufflinks Cole Trapnell, Adam Roberts, Loyal A. Goff, Nature Protocols Differential GeneNatural SciencesGeneticsRna BiologyMolecular Biology	2012	12.6K
Comprehensive molecular portraits of human breast tumours Nature Breast OncologyComprehensive Molecular PortraitsTumor HeterogeneityPathologyBreast Cancer	2012	12.1K
Molecular signatures database (MSigDB) 3.0 Arthur Liberzon, Aravind Subramanian, Reid M. Pinchback, Bioinformatics	2011	7.4K
The <tt>sva</tt> package for removing batch effects and other unwanted variation in high-throughput experiments Jeffrey T. Leek, W. Evan Johnson, Hilary S. Parker, Bioinformatics	2012	6.4K

Page 1