Molecular & Cellular Proteomics · 2019 · 17 citations · 35 references
Life SciencesMicrobiologyMolecular BiologyBacteriologyMicrobial EcologyProteomicsMass Spectrometry-based ProteomicsMicrobial ProteomicsProteomic ProfilingQuantitative ProteomicsLabel-free ProteomicsP2 ComponentPhage CharacterizationPhage ProteomicsQuantitative Proteomics Workflows
showed resistance to phage p2 because of a deficiency in phage adsorption. Furthermore, we detected and quantified 78% of the theoretical phage proteome and identified many proteins of phage p2 that had not been previously detected. Among others, we uncovered a conserved small phage protein (pORFN1) coded by an unannotated gene. We also applied a targeted approach to achieve greater sensitivity and identify undetected phage proteins that were expected to be present. This allowed us to follow the fate of pORF46, a small phage protein of low abundance. In summary, this work offers a unique view of the virulent phages' takeover of bacterial cells and provides novel information on phage-host interactions.
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The Perseus computational platform for comprehensive analysis of (prote)omics data
Stefka Tyanova, Tikira Temu, Pavel Sinitcyn et al. · Nature Methods · 2016 · 8.9K citations
UniProt: the Universal Protein knowledgebase
Rolf Apweiler · Nucleic Acids Research · 2003 · 7.8K citations · Full text