Nature Microbiology · 2019 · 2K citations · 60 references
Life SciencesNeurosciencePsychiatryAffective NeuroscienceMicrobiome ResearchNeurobiology Of DiseaseDepressionDepressive DisordersGut MicrobiomeGut MicrobiotaMicrobiome DysbiosisMicrobiome FunctionGut Microbiota CompositionGut Microbiota DysbiosisMicrobiome-gut-brain AxisMicrobiome-gut-brain CommunicationMicrobiota-gut-brain Axis
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R: A Language and Environment for Statistical Computing
R Core Team · 2000 · 353K citations · Full text
Natural Sciences, Computer Science, Statistical Computing +10
Trimmomatic: a flexible trimmer for Illumina sequence data
Anthony Bolger, Marc Lohse, Björn Usadel · Bioinformatics · 2014 · 69.7K citations · Full text
Fast and accurate short read alignment with Burrows–Wheeler transform
Heng Li, Richard Durbin · Bioinformatics · 2009 · 62.8K citations · Full text
DADA2: High-resolution sample inference from Illumina amplicon data
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