Microbes and Environments · 2019 · 12 citations · 12 references
AgricultureOrganic AgricultureSoil SciencesMicrobial EcologySoil BiologySoil MicrobiologyBacterial EcologyMicrobial Community DynamicsMicrobial Community ProfilingMicrobial DiversityPlant-associated Microbial CommunitiesSoil Microbial PhysiologyAmplicon Sequencing AnalysisBacterial Community DynamicsBacterial Community EcologyCommunity CompositionSoil Bacterial DiversitySoil Microbial Community CompositionSoil Microbial Community DynamicsSoil Microbial Community Structure
Soil bacterial community compositions and temporal changes in organic paddy fields were elucidated using a 16S rRNA gene amplicon sequencing analysis with a high-throughput next generation sequencer. At transplanting, bacterial community compositions in organic and conventional paddy fields were mostly similar despite differences in field management. The bacterial community composition in organic fields differed from that under conventional management during the rice growth period, possibly as a result of the decomposition process of organic fertilizers. However, differences in the frequency of tillage and photosynthetic bacterial inoculations in the organic plots had less of an impact on bacterial communities.
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DADA2: High-resolution sample inference from Illumina amplicon data
Benjamin J. Callahan, Paul J. McMurdie, Michael Rosen et al. · Nature Methods · 2016 · 36.3K citations