Concepedia

Transcriptome analysis of adipose tissue from pigs divergent in feed efficiency reveals alteration in gene networks related to adipose growth, lipid metabolism, extracellular matrix, and immune response

Justyna Horodyska, Henry Reyer, Klaus Wimmers, Nares Trakooljul, Peadar G. Lawlor, Ruth M. Hamill

Molecular Genetics and Genomics · 2018 · 32 citations · 43 references

Concepts

Life SciencesMolecular BiologyPhysiologyGene ExpressionMetabolic RegulationMetabolismAdipose TissueFatty Acid MetabolismFatty Acid Oxidation RegulationMammalian PhysiologyMetabolic SignalingAdipocyte BiologyAdipose Tissue Extracellular MatrixAdipose Tissue Gene Expression ResponsesAdipose Tissue Lipid MetabolismLipid Metabolism PathwaysRegulatory Gene NetworksTranscriptome AnalysisWhole Transcriptome Analysis

References

43

Moderated estimation of fold change and dispersion for RNA-seq data with DESeq2

Michael I. Love, Wolfgang Huber, Simon Anders · Genome biology · 2014 · 100.5K citations · Full text

Life Sciences, Bioinformatics, Biostatistics +15

Fitting Linear Mixed-Effects Models Using <b>lme4</b>

Douglas M. Bates, Martin Mächler, Benjamin M. Bolker et al. · Journal of Statistical Software · 2015 · 85.6K citations · Full text

Business, Biostatistics, Optimization +15

HTSeq—a Python framework to work with high-throughput sequencing data

Simon Anders, Paul Theodor Pyl, Wolfgang Huber · Bioinformatics · 2014 · 22.7K citations · Full text

Life Sciences, Bioinformatics, Biology +11

TopHat2: accurate alignment of transcriptomes in the presence of insertions, deletions and gene fusions

Daehwan Kim, Geo Pertea, Cole Trapnell et al. · Genome biology · 2013 · 13.7K citations · Full text

Life Sciences, Bioinformatics, Genetics +14

Causal analysis approaches in Ingenuity Pathway Analysis

A. Krämer, Jeff Green, Jack Pollard et al. · Bioinformatics · 2013 · 6.1K citations · Full text

Life Sciences, Bioinformatics, Systems Biology +13