bioRxiv (Cold Spring Harbor Laboratory) · 2018 · 17 citations · 22 references
Life SciencesCell BiologyMolecular BiologyGenomicsProtein EngineeringProteomicsFunctional ProteomicsProtein Function AnnotationSecretome AnalysisSecretory PathwayTargeted ProteomicsCell Factory EngineeringCell-type Specific SecretionCellular DedifferentiationComputational Secretome PredictionHek293 Cell ExpressionPhenotypic AssaysProtein Secretion EngineeringSecreted Protein Identification
Abstract The proteins secreted by human tissues (the secretome) are important for the basic understanding of human biology, but also for identification of potential targets for future diagnosis and therapy. Here, we present an annotation of all predicted secreted proteins (n=2,623) with information about their spatial distribution in the human body. A high-throughput mammalian cell factory was established to create a resource of recombinant full-length proteins. This resource was used for phenotypic assays involving β-cell dedifferentiation and for development of targeted proteomics assays. A comparison between host cells, including omics analysis, shows that many of the proteins that failed to be generated in CHO cells could be rescued in human HEK293 cells. In conclusion, the human secretome has been mapped and characterized to facilitate further exploration of the human secretome.
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Tissue-based map of the human proteome
Mathias Uhlén, Linn Fagerberg, Björn M. Hallström et al. · Science · 2015 · 15.9K citations · Full text
Global quantification of mammalian gene expression control
Björn Schwanhäußer, Dorothea Busse, Na Li et al. · Nature · 2011 · 6.9K citations