mSystems · 2018 · 27 citations · 74 references
Life SciencesBiochemistryMolecular BiologyGene ExpressionProtein TranslationTranscriptomicsProtein SynthesisProtozoan Host-parasite InteractionsProtozoan PathogenesisRibosome BiogenesisRibosome ProfilingTranslation In EukaryotesChaperone InhibitorsHeat Shock Protein InhibitorsHsp90 Chaperone SystemLeishmania Life CycleLeishmaniasis PathogenesisRegulation By Heat Shock ProteinsRibosome-associated ChaperonesVisceral Leishmaniasis
Leishmania parasites cause severe illness in humans and animals. They exist in two developmental stages, insect form and mammalian form, which differ in shape and gene expression. By mapping and quantifying RNA fragments protected by protein synthesis complexes, we determined the rates of protein synthesis for >90% of all Leishmania proteins in response to the inhibition of a key regulatory protein, the 90-kDa heat shock protein. We find that Leishmania depends on a regulation of protein synthesis for controlling its gene expression and that heat shock protein 90 inhibition can trigger the developmental program from insect form to mammalian form of the pathogen.
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The Sequence Alignment/Map format and SAMtools
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STAR: ultrafast universal RNA-seq aligner
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Cutadapt removes adapter sequences from high-throughput sequencing reads
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