Journal of Cellular Biochemistry · 2018 · 20 citations · 32 references
Life SciencesCancer BiologyOncologyCancer GeneticsGene ExpressionMolecular OncologyCancer TranscriptomicsMicrorna BiologyMicrorna-mediated RegulationNoncoding Rna BiologyNoncoding Rna FunctionNoncoding Rna In CancerBiomarkersCancer-related Noncoding Rna FunctionLong Noncoding Rna RegulationMicrorna In CancerNoncoding Rna Expression ProfilingNoncoding Rna-mediated Gene RegulationOsteosarcoma TreatmentTherapeutic Target Identification
More and more evidence indicate long noncoding RNAs (lncRNAs) as competing endogenous RNAs (ceRNAs) to indirectly regulate messenger RNAs (mRNAs) by acting as microRNA (miRNA) sponges, which represents a novel layer of gene regulation that plays a critical role in the development of cancers. However, functional roles and regulatory mechanisms of lncRNA-mediated ceRNAs network in osteosarcoma are still largely unknown. Here, we comprehensively compared the expression profiles of mRNAs, lncRNAs, and miRNAs between osteosarcoma and normal samples from the Gene Expression Omnibus (GEO) to elaborate related latent mechanisms. Two lncRNAs, ie, LINC01560 and MEG3, were identified to be aberrantly expressed. Importantly, MEG3 was considered as a promising diagnostic biomarker and therapeutic target for patients with osteosarcoma according to the Kaplan-Meier analysis of another independent osteosarcoma data set from the Cancer Genome Atlas (P = 0.05). Eventually, we successfully established a dysregulated lncRNA-related ceRNA network, including one osteosarcoma-specific lncRNA, three miRNAs and four mRNAs. In conclusion, this study should be beneficial for improving our understanding of the lncRNA-mediated ceRNA regulatory mechanisms in the pathogenesis of osteosarcoma and providing it with novel candidate diagnostic and therapeutic biomarkers.
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KOBAS 2.0: a web server for annotation and identification of enriched pathways and diseases
Chen Xie, Xizeng Mao, Jiaju Huang et al. · Nucleic Acids Research · 2011 · 5.5K citations · Full text
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