Science · 2019 · 258 citations · 164 references
Life SciencesBiologyVision ScienceDeep-sea BiologyFish BiologyFish PhysiologyDeep-sea Fish BiologyFish Comparative GenomicsFish GenomicsGenetics Of Marine FishesMarine Fish BiologyMarine GenomicsEvolutionary Genomics Of FishFish Genome EvolutionOpsin BiochemistryOpsin Gene EvolutionOpsin PhysiologyRhodopsin FunctionRod PhysiologyVisual Information Systems
Fish catch color with rods Vertebrates are typically thought to have a consistent system for processing light, in which multiple cone opsins permit color vision during the day, but a single rod opsin provides only monochrome vision in the dark. Musilova et al. analyzed more than 100 deep-sea fish genomes and found a previously unknown proliferation of rod opsin genes that generate rod opsin photopigments that are tuned to different wavelengths of light. These receptors may allow the fish to perceive bioluminescent signals that pervade their deep-sea environment. These results reveal a previously undescribed visual system that allows for color vision in the dark. Science , this issue p. 588
164
Cutadapt removes adapter sequences from high-throughput sequencing reads
Marcel Martin · EMBnet journal · 2011 · 35.8K citations · Full text
Full-length transcriptome assembly from RNA-Seq data without a reference genome
Manfred Grabherr, Brian J. Haas, Moran Yassour et al. · Nature Biotechnology · 2011 · 22.6K citations · Full text
PAML 4: Phylogenetic Analysis by Maximum Likelihood
Molecular Biology and Evolution · 2007 · 14.8K citations · Full text