Concepedia

Integrating coalescent species delimitation with analysis of host specificity reveals extensive cryptic diversity despite minimal mitochondrial divergence in the malaria parasite genus Leucocytozoon

Spencer C. Galen, Renato Nunes, Paul R. Sweet, Susan L. Perkins

BMC Evolutionary Biology · 2018 · 63 citations · 81 references

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References

81

RAxML version 8: a tool for phylogenetic analysis and post-analysis of large phylogenies

Alexandros Stamatakis · Bioinformatics · 2014 · 33.3K citations · Full text

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phyloseq: An R Package for Reproducible Interactive Analysis and Graphics of Microbiome Census Data

Paul J. McMurdie, Susan Holmes · PLoS ONE · 2013 · 21K citations · Full text

APE: Analyses of Phylogenetics and Evolution in R language

Emmanuel Paradis, Julien Claude, Korbinian Strimmer · Bioinformatics · 2004 · 12.3K citations · Full text

Selection of Conserved Blocks from Multiple Alignments for Their Use in Phylogenetic Analysis

José Castresana · Molecular Biology and Evolution · 2000 · 10.6K citations · Full text

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Posterior Summarization in Bayesian Phylogenetics Using Tracer 1.7

Andrew Rambaut, Alexei J. Drummond, Dong Xie et al. · Systematic Biology · 2018 · 10.6K citations · Full text

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