Cell Metabolism · 2018 · 247 citations · 57 references
Life SciencesImmunologyNutritional SciencesInflammationInnate ImmunityMetabolismFatty Acid MetabolismGut MicrobiotaLipid MetabolismMacrophage BiologyMetabolic InflammationMetabolic SignalingBeige Adipose TissueGut Microbiota CompositionGut Microbiota DysbiosisGut Microbiota EffectsGut RemodelingInflammation-mediated Metabolic ChangesLipopolysaccharide BiosynthesisMacrophage Polarization
57
Trimmomatic: a flexible trimmer for Illumina sequence data
Anthony Bolger, Marc Lohse, Björn Usadel · Bioinformatics · 2014 · 69.7K citations · Full text
UPARSE: highly accurate OTU sequences from microbial amplicon reads
R. C. Edgar · Nature Methods · 2013 · 17.3K citations
Fast and sensitive protein alignment using DIAMOND
Benjamin Buchfink, Chao Xie, Daniel H. Huson · Nature Methods · 2014 · 15.2K citations
An obesity-associated gut microbiome with increased capacity for energy harvest
Peter J. Turnbaugh, Ruth E. Ley, Michael A. Mahowald et al. · Nature · 2006 · 12.4K citations