Journal of Virology · 2018 · 159 citations · 39 references
Life SciencesBiologyMicrobiologyMolecular VirologyParasitologyVirologyLyme DiseaseTick BiologyTick-borne DiseasesViral EpidemiologyViral InfectionsVirus TaxonomyLyme Disease EpidemiologyTick Bite Site InfectionTick GenomicsTick PhylogenyTick-borne Disease EcologyTick-borne Disease InvestigationTick-borne Pathogens
Each year a growing number of individuals along the east coast of Australia experience debilitating disease following tick bites. As there is no evidence for the presence of the causative agent of Lyme disease, Borrelia b urgdorferi sensu lato , in Australian ticks, the etiological basis of this disease syndrome remains controversial. To characterize the viruses associated with Australian ticks, particularly those that might be associated with mammalian infection, we performed unbiased RNA sequencing on 146 ticks collected across two locations along the coast of New South Wales, Australia. This revealed 19 novel RNA viruses from a diverse set of families. Notably, three of these viruses clustered with known mammalian viruses, including a novel coltivirus that was related to the human pathogen Colorado tick fever virus.
39
Basic local alignment search tool
Stephen F. Altschul, Warren Gish, Webb Miller et al. · Journal of Molecular Biology · 1990 · 94.5K citations
Full-length transcriptome assembly from RNA-Seq data without a reference genome
Manfred Grabherr, Brian J. Haas, Moran Yassour et al. · Nature Biotechnology · 2011 · 22.6K citations · Full text