Experimental & Molecular Medicine · 2018 · 84 citations · 29 references
Life SciencesBioinformaticsMolecular BiologyGene ExpressionGenomicsTranscriptomicsDegenerative Spine DiseaseIntervertebral Disc DiseaseMicrorna BiologyMicrorna-mediated RegulationNoncoding Rna TranscriptomicsCircular RnasDifferential Expression In MicrornaIntervertebral Disc DegenerationLuciferase ReportersMicroarray AnalysisNucleus Pulposus DegenerationReceiver Operating Characteristic AnalysisTissue Microarray Analysis
Abstract This study was carried out to explore the roles of circular RNAs (circRNAs) in nucleus pulposus (NP) tissues in intervertebral disc degeneration (IDD). Differentially expressed circRNAs in IDD and normal NP tissues were identified based on the results of microarray analysis. Bioinformatics techniques were employed to predict the direct interactions of selected circRNAs, microRNAs (miR), and mRNAs. CircRNA_104670 was selected as the target circRNA due to its large multiplier expression in IDD tissues. After luciferase reporter and EGFP/RFP reporter assays, we confirmed that circRNA_104670 directly bound to miR-17-3p, while MMP-2 was the direct target of miR-17-3p. The receiver-operating characteristic (ROC) curve showed that circRNA_104670 and miR-17-3p had good diagnostic significance for IDD (AUC circRNA_104670 = 0.96; AUC miRNA-17-3p = 0.91). A significant correlation was detected between the Pfirrmann grade and expression of circRNA_104670 ( r = 0.63; p = 0.00) and miR-17-3p ( r = −0.62; p = 0.00). Flow-cytometric analysis and the MTT assay showed that interfering with circRNA_104670 using small interfering RNA (siRNA) inhibited NP cell apoptosis ( p < 0.01), and this inhibition was reduced by interfering with miR-17-3p. Interfering with circRNA_104670 suppressed MMP-2 expression and increased extracellular matrix (ECM) formation, which were also reduced by interfering with miR-17-3p. Finally, an MRI evaluation showed that circRNA_104670 inhibition mice had a lower IDD grade compared with control mice ( p < 0.01), whereas circRNA_104670 and miRNA-17-3p inhibition mice had a higher IDD grade compared with circRNA_104670 inhibition mice ( p < 0.05). CircRNA_104670 is highly expressed in the NP tissues of IDD and acts as a ceRNA during NP degradation.
29
Circular RNAs are a large class of animal RNAs with regulatory potency
Sebastian Memczak, Marvin Jens, Antigoni Elefsinioti et al. · Nature · 2013 · 8.5K citations
Natural RNA circles function as efficient microRNA sponges
Thomas B. Hansen, Trine I. Jensen, Bettina Hjelm Clausen et al. · Nature · 2013 · 8.5K citations
circRNA Biogenesis Competes with Pre-mRNA Splicing
Reut Ashwal-Fluss, Markus Meyer, Nagarjuna Reddy Pamudurti et al. · Molecular Cell · 2014 · 3.3K citations · Full text
Detecting and characterizing circular RNAs
William R. Jeck, Norman E. Sharpless · Nature Biotechnology · 2014 · 2.9K citations · Full text