Proteomic diversity in a prevalent human-infective Giardia duodenalis sub-species

MaxQuant enables high peptide identification rates, individualized p.p.b.-range mass accuracies and proteome-wide protein quantification

Jürgen Cox, Matthias Mann · Nature Biotechnology · 2008 · 15.7K citations

Life Sciences, Biochemistry, Mass Spectrometric Analysis +15

The Perseus computational platform for comprehensive analysis of (prote)omics data

Stefka Tyanova, Tikira Temu, Pavel Sinitcyn et al. · Nature Methods · 2016 · 8.9K citations

Life Sciences, Bioinformatics, Molecular Biology +10

Protocol for micro-purification, enrichment, pre-fractionation and storage of peptides for proteomics using StageTips

Juri Rappsilber, Matthias Mann, Yasushi Ishihama · Nature Protocols · 2007 · 4.9K citations

Life Sciences, Biochemistry, Biotechnology +10

WEGO: a web tool for plotting GO annotations

Jia Ye, Lin Fang, Hongkun Zheng et al. · Nucleic Acids Research · 2006 · 2.8K citations · Full text

Life Sciences, Bioinformatics, Visualization +11

Large-scale gene function analysis with the PANTHER classification system

Huaiyu Mi, Anushya Muruganujan, John T. Casagrande et al. · Nature Protocols · 2013 · 2.6K citations · Full text

Life Sciences, Bioinformatics, Molecular Biology +11