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Comprehensive multi-center assessment of small RNA-seq methods for quantitative miRNA profiling

María D. Giraldez, Ryan M. Spengler, Alton Etheridge, Paula M. Godoy, Andrea J. Barczak, Srimeenakshi Srinivasan, Peter L De Hoff, Kahraman Tanrıverdi, Amanda Courtright, Shulin Lu,

Nature Biotechnology · 2018 · 184 citations · 52 references

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52

Moderated estimation of fold change and dispersion for RNA-seq data with DESeq2

Michael I. Love, Wolfgang Huber, Simon Anders · Genome biology · 2014 · 100.5K citations · Full text

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<tt>edgeR</tt> : a Bioconductor package for differential expression analysis of digital gene expression data

Mark D. Robinson, Davis J. McCarthy, Gordon K. Smyth · Bioinformatics · 2009 · 44.5K citations · Full text

, , +14

Mapping and quantifying mammalian transcriptomes by RNA-Seq

A Mortazavi, Brian A. Williams, Kenneth McCue et al. · Nature Methods · 2008 · 14.3K citations

, , +10

The Cancer Genome Atlas Pan-Cancer analysis project

John N. Weinstein, Gordon B. Mills, Kenna Shaw et al. · Nature Genetics · 2013 · 9.5K citations · Full text

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voom: precision weights unlock linear model analysis tools for RNA-seq read counts

Charity W. Law, Yunshun Chen, Wei Shi et al. · Genome biology · 2014 · 6.7K citations · Full text

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