Concepedia

Defining endemic cholera at three levels of spatiotemporal resolution within Bangladesh

Daryl Domman, Fahima Chowdhury, Ashraful Islam Khan, Matthew J. Dorman, Ankur Mutreja, Muhammad Ikhtear Uddin, Anik Paul, Yasmin Ara Begum, Richelle C. Charles, Stephen B. Calderwood,

Nature Genetics · 2018 · 47 citations · 40 references

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40

The Sequence Alignment/Map format and SAMtools

Heng Li, Alec Wysoker, Tim Fennell et al. · Bioinformatics · 2009 · 67.5K citations · Full text

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RAxML version 8: a tool for phylogenetic analysis and post-analysis of large phylogenies

Alexandros Stamatakis · Bioinformatics · 2014 · 34.3K citations · Full text

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IQ-TREE: A Fast and Effective Stochastic Algorithm for Estimating Maximum-Likelihood Phylogenies

Lam-Tung Nguyen, Heiko A. Schmidt, Arndt von Haeseler et al. · Molecular Biology and Evolution · 2014 · 27.5K citations · Full text

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SPAdes: A New Genome Assembly Algorithm and Its Applications to Single-Cell Sequencing

Anton Bankevich, Sergey Nurk, Dmitry Antipov et al. · Journal of Computational Biology · 2012 · 27.2K citations

, , +17

Prokka: rapid prokaryotic genome annotation

Torsten Seemann · Bioinformatics · 2014 · 19.6K citations

, , +13