Concepedia

RNA-Seq of Circulating Tumor Cells in Stage II–III Breast Cancer

Julie E. Lang, Alexander Ring, Tania B. Porras, Pushpinder Kaur, Victoria Forte, Neal Mineyev, Debu Tripathy, Michael F. Press, Daniel Campo

Annals of Surgical Oncology · 2018 · 56 citations · 37 references

Concepts

MedicineCancer BiologyOncologyGene ExpressionMolecular OncologyTranscriptomicsBreast Cancer OncologyCancer ProgressionCancer TranscriptomicsCirculating Tumor CellsLiquid BiopsyNext-generation Sequencing In OncologyCirculating Tumor Cell Molecular ProfilingCirculating Tumor Cell Transcriptomic AnalysisRna Sequencing (Rna-seq)

References

37

Trimmomatic: a flexible trimmer for Illumina sequence data

Anthony Bolger, Marc Lohse, Björn Usadel · Bioinformatics · 2014 · 69.7K citations · Full text

Life Sciences, Bioinformatics, Molecular Biology +13

STAR: ultrafast universal RNA-seq aligner

Alexander Dobin, Carrie Davis, Felix Schlesinger et al. · Bioinformatics · 2012 · 56.2K citations · Full text

Life Sciences, Bioinformatics, Molecular Biology +17

<tt>edgeR</tt> : a Bioconductor package for differential expression analysis of digital gene expression data

Mark D. Robinson, Davis J. McCarthy, Gordon K. Smyth · Bioinformatics · 2009 · 44.5K citations · Full text

Life Sciences, Bioinformatics, Biostatistics +14

The cBio Cancer Genomics Portal: An Open Platform for Exploring Multidimensional Cancer Genomics Data

Ethan Cerami, Jianjiong Gao, Uğur Doğrusöz et al. · Cancer Discovery · 2012 · 18.4K citations · Full text

Medicine, Bioinformatics, Oncology +15

Integrative Analysis of Complex Cancer Genomics and Clinical Profiles Using the cBioPortal

Jianjiong Gao, Bülent Arman Aksoy, Uğur Doğrusöz et al. · Science Signaling · 2013 · 15.9K citations · Full text

Medicine, Bioinformatics, Oncology +17