Communications Biology · 2018 · 37 citations · 36 references
Life SciencesBiochemistryMolecular BiologyGene ExpressionMetabolic RegulationMetabolismCholesterol BiosynthesisCholesterol MetabolismLipid MetabolismSteroid BiosynthesisSteroid MetabolismSteroidogenesis RegulationCholesterol Biosynthesis ControlGlycolytic PathwaysMitochondrial Regulation Of Steroid Hormone SynthesisSteroid Hormone Biosynthetic PathwaysSteroid Hormone MetabolismSteroidogenesis Pathway RegulationSteroidogenic Regulation
Abstract Housekeeping metabolic pathways such as glycolysis are active in all cell types. In addition, many types of cells are equipped with cell-specific metabolic pathways. To properly perform their functions, housekeeping and cell-specific metabolic pathways must function cooperatively. However, the regulatory mechanisms that couple metabolic pathways remain largely unknown. Recently, we showed that the steroidogenic cell-specific nuclear receptor Ad4BP/SF-1, which regulates steroidogenic genes, also regulates housekeeping glycolytic genes. Here, we identify cholesterogenic genes as the targets of Ad4BP/SF-1. Further, we reveal that Ad4BP/SF-1 regulates Hummr , a candidate mediator of cholesterol transport from endoplasmic reticula to mitochondria. Given that cholesterol is the starting material for steroidogenesis and is synthesized from acetyl-CoA, which partly originates from glucose, our results suggest that multiple biological processes involved in synthesizing steroid hormones are governed by Ad4BP/SF-1. To our knowledge, this study provides the first example where housekeeping and cell-specific metabolism are coordinated at the transcriptional level.
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Model-based Analysis of ChIP-Seq (MACS)
Yong Zhang, Tao Liu, Clifford A. Meyer et al. · Genome biology · 2008 · 19.9K citations · Full text
TopHat: discovering splice junctions with RNA-Seq
Cole Trapnell, Lior Pachter, Steven L. Salzberg · Bioinformatics · 2009 · 12.1K citations · Full text