Genomes of all known members of a Plasmodium subgenus reveal paths to virulent human malaria

References

Page 1

	Year	Citations
Fast and accurate short read alignment with Burrows–Wheeler transform Heng Li, Richard Durbin Bioinformatics	2009	60.7K
MUSCLE: multiple sequence alignment with high accuracy and high throughput R. C. Edgar Nucleic Acids Research GeneticsMolecular BiologyGenomicsSequence AlignmentMuscle Program	2004	45.3K
RAxML version 8: a tool for phylogenetic analysis and post-analysis of large phylogenies Alexandros Stamatakis Bioinformatics Abstract MotivationGeneticsGenomicsPhylogenetic AnalysisPhylogenetics	2014	33.3K
The Genome Analysis Toolkit: A MapReduce framework for analyzing next-generation DNA sequencing data Aaron McKenna, Matthew G. Hanna, Eric Banks, Genome Research	2010	28.9K
New Algorithms and Methods to Estimate Maximum-Likelihood Phylogenies: Assessing the Performance of PhyML 3.0 Stéphane Guindon, Jean-François Dufayard, Vincent Lefort, Systematic Biology	2010	18.4K
The variant call format and VCFtools Petr Danecek, Adam Auton, Gonçalo R. Abecasis, Bioinformatics	2011	16.8K
PAML 4: Phylogenetic Analysis by Maximum Likelihood Molecular Biology and Evolution	2007	14.3K
Selection of Conserved Blocks from Multiple Alignments for Their Use in Phylogenetic Analysis José Castresana Molecular Biology and Evolution Comparative GenomicsGeneticsGenomicsSequence AlignmentDivergent Alignments	2000	10.6K
Jalview Version 2—a multiple sequence alignment editor and analysis workbench Andrew Waterhouse, James B Procter, David Martin, Bioinformatics	2009	10.5K
OrthoMCL: Identification of Ortholog Groups for Eukaryotic Genomes Li Li, Christian J. Stoeckert, David S. Roos Genome Research	2003	6K

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