Concepedia

Bystander CD8+ T cells are abundant and phenotypically distinct in human tumour infiltrates

Yannick Simoni, Étienne Becht, Michael Fehlings, Chiew Yee Loh, Si‐Lin Koo, Karen Wei Weng Teng, Joe Yeong, Rahul Nahar, Tong Zhang, Hassen Kared,

Nature · 2018 · 1.4K citations · 47 references

DOI

Concepts

References

47

Visualizing Data using t-SNE

Laurens van der Maaten, Geoffrey E. Hinton · Journal of Machine Learning Research · 2008 · 35.7K citations

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The Genome Analysis Toolkit: A MapReduce framework for analyzing next-generation DNA sequencing data

Aaron McKenna, Matthew G. Hanna, Eric Banks et al. · Genome Research · 2010 · 30K citations · Full text

, , +17

featureCounts: an efficient general purpose program for assigning sequence reads to genomic features

Yang Liao, Gordon K. Smyth, Wei Shi · Bioinformatics · 2013 · 29.1K citations · Full text

, , +14

voom: precision weights unlock linear model analysis tools for RNA-seq read counts

Charity W. Law, Yunshun Chen, Wei Shi et al. · Genome biology · 2014 · 6.7K citations · Full text

, , +12

Clonal neoantigens elicit T cell immunoreactivity and sensitivity to immune checkpoint blockade

Nicholas McGranahan, Andrew J.S. Furness, Rachel Rosenthal et al. · Science · 2016 · 3.1K citations · Full text

, , +17