Journal of Biological Chemistry · 2018 · 37 citations · 74 references
Life SciencesCell BiologyPhysiologyCalcium HomeostasisCell SignalingIon Channel BiophysicsCalcium MetabolismCalcium SignalingCalcium Transport ProteinsIntracellular Calcium SignalingCalcium Pump KineticsCalcium PumpsCalcium Signal TransductionIntracellular Calcium DynamicsIntracellular Calcium Homeostasis
mutations of three acidic residues of the loop decreased SERCA domain-domain contacts and increased domain-domain separation distances. Principal component analysis of MD simulations suggested decreased sampling of compact conformations upon N-loop mutagenesis. Deficits in headpiece structural dynamics were also detected by measuring intramolecular FRET of a Cer-YFP-SERCA construct (2-color SERCA). Compared with WT, the mutated 2-color SERCA shows a partial FRET response to calcium, whereas retaining full responsiveness to the inhibitor thapsigargin. Functional measurements showed that the mutated transporter still hydrolyzes ATP and transports calcium, but that maximal enzyme activity is reduced while maintaining similar calcium affinity. In live cells, calcium elevations resulted in concomitant FRET changes as the population of WT 2-color SERCA molecules redistributed among intermediates of the transport cycle. Our results provide novel insights on how the population of SERCA pumps responds to dynamic changes in intracellular calcium.
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Fiji: an open-source platform for biological-image analysis
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VMD: Visual molecular dynamics
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Molecular dynamics with coupling to an external bath
Herman J. C. Berendsen, Johan P. M. Postma, Wilfred F. van Gunsteren et al. · The Journal of Chemical Physics · 1984 · 31K citations · Full text
Natural Sciences, Chemistry, Physics +17