JCI Insight · 2018 · 29 citations · 44 references
MedicineMolecular GeneticsOncologyCancer GeneticsMolecular OncologySignal TransductionCancer Cell SignalingCancer Genome SequencingCancer GenomicsNext-generation Sequencing In OncologyOncogenic Signaling PathwaysSignal Transduction In CancerBreast Cancer GenomicsBreast Cancer Molecular SubtypesInsulin Receptor SignalingInsulin Receptor Substrate ProteinsInsulin Receptor Substrate SignalingInsulin Signaling PathwayInsulin-like Growth Factor-1Irs Proteins
Pleomorphic invasive lobular carcinoma (PILC) is an aggressive variant of invasive lobular breast cancer that is associated with poor clinical outcomes. Limited molecular data are available to explain the mechanistic basis for PILC behavior. To address this issue, targeted sequencing was performed to identify molecular alterations that define PILC. This sequencing analysis identified genes that distinguish PILC from classic ILC and invasive ductal carcinoma by the incidence of their genomic changes. In particular, insulin receptor substrate 2 (IRS2) is recurrently mutated in PILC, and pathway analysis reveals a role for the insulin receptor (IR)/insulin-like growth factor-1 receptor (IGF1R)/IRS2 signaling pathway in PILC. IRS2 mutations identified in PILC enhance invasion, revealing a role for this signaling adaptor in the aggressive nature of PILC.
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Fast and accurate short read alignment with Burrows–Wheeler transform
Heng Li, Richard Durbin · Bioinformatics · 2009 · 62.8K citations · Full text
Cytoscape: A Software Environment for Integrated Models of Biomolecular Interaction Networks
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Ethan Cerami, Jianjiong Gao, Uğur Doğrusöz et al. · Cancer Discovery · 2012 · 18.4K citations · Full text
Medicine, Bioinformatics, Oncology +15