Nature Communications · 2018 · 118 citations · 51 references
DentistryOral BiologyOral Health SciencesOral AnatomyOral ImmunologyOral MicrobiologyMicrobiological AnalysisOral Bacterial EcologyOral MicrobiomeOral Microbiome EcologySalivary MicrobiologySalivary Microbiome AnalysisHost-associated Bacterial CommunitiesOral Microbial Community DynamicsOral Microbial EcologyOral Microbiome AnalysisOral Microbiome DiversitySalivary Bacterial DiversitySalivary Microbial Community StructureSalivary Microbial Ecology
Spatial and temporal patterns in microbial communities provide insights into the forces that shape them, their functions and roles in health and disease. Here, we used spatial and ecological statistics to analyze the role that saliva plays in structuring bacterial communities of the human mouth using >9000 dental and mucosal samples. We show that regardless of tissue type (teeth, alveolar mucosa, keratinized gingiva, or buccal mucosa), surface-associated bacterial communities vary along an ecological gradient from the front to the back of the mouth, and that on exposed tooth surfaces, the gradient is pronounced on lingual compared to buccal surfaces. Furthermore, our data suggest that this gradient is attenuated in individuals with low salivary flow due to Sjögren's syndrome. Taken together, our findings imply that salivary flow influences the spatial organization of microbial communities and that biogeographical patterns may be useful for understanding host physiological processes and for predicting disease.
51
DADA2: High-resolution sample inference from Illumina amplicon data
Benjamin J. Callahan, Paul J. McMurdie, Michael Rosen et al. · Nature Methods · 2016 · 36.3K citations
Structure, function and diversity of the healthy human microbiome
Curtis Huttenhower, J. Fah Sathirapongsasuti, Nicola Segata et al. · Nature · 2012 · 11.9K citations · Full text
Life Sciences, Biology, Microbiology +17