Nature Communications · 2018 · 138 citations · 64 references
Veterinary MedicineGeneticsOncologyMolecular OncologyNeoplasiaSignal TransductionCancer Cell SignalingCancer Molecular PathologyMalignant NeoplasmsMammary TumorsOncogenic Signaling PathwaysSignal Transduction In CancerCancer Mutation SignaturesEstrogen Receptor SignalingEstrogen Receptor StatusHotspot MutationsOncogenic Receptor Tyrosine Kinase MutationsPik3ca MutationsThree-dimensional Cell CultureTumor Exome Sequencing
Abstract Adenomyoepithelioma of the breast is a rare tumor characterized by epithelial−myoepithelial differentiation, whose genetic underpinning is largely unknown. Here we show through whole-exome and targeted massively parallel sequencing analysis that whilst estrogen receptor (ER)-positive adenomyoepitheliomas display PIK3CA or AKT1 activating mutations, ER-negative adenomyoepitheliomas harbor highly recurrent codon Q61 HRAS hotspot mutations, which co-occur with PIK3CA or PIK3R1 mutations. In two- and three-dimensional cell culture models, forced expression of HRAS Q61R in non-malignant ER-negative breast epithelial cells with or without a PIK3CA H1047R somatic knock-in results in transformation and the acquisition of the cardinal features of adenomyoepitheliomas, including the expression of myoepithelial markers, a reduction in E-cadherin expression, and an increase in AKT signaling. Our results demonstrate that adenomyoepitheliomas are genetically heterogeneous, and qualify mutations in HRAS , a gene whose mutations are vanishingly rare in common-type breast cancers, as likely drivers of ER-negative adenomyoepitheliomas.
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The Sequence Alignment/Map format and SAMtools
Heng Li, Alec Wysoker, Tim Fennell et al. · Bioinformatics · 2009 · 67.5K citations · Full text
Fast and accurate short read alignment with Burrows–Wheeler transform
Heng Li, Richard Durbin · Bioinformatics · 2009 · 62.8K citations · Full text
Comprehensive molecular portraits of human breast tumours