Concepedia

Comprehensive Identification and Spatial Mapping of Habenular Neuronal Types Using Single-Cell RNA-Seq

Shristi Pandey, Karthik Shekhar, Aviv Regev, Alexander F. Schier

Current Biology · 2018 · 174 citations · 58 references

Open access

Concepts

Life SciencesNeurobiologyNeuroscienceCellular NeuroscienceMolecular NeuroscienceTranscriptomicsNeuronal Cell BiologyNeuronal Cell TypesSingle-cell AnalysisSingle-cell Rna Sequencing AnalysisSingle-cell TranscriptomicsSpatial Single-cell AnalysisCell-type IdentificationNeuronal Cell Type TranscriptomicsNeuronal TranscriptomicsSingle-cell Spatial MappingSingle-cell Transcriptomics In Neuroscience

References

58

Leo Breiman · Machine Learning · 2001 · 126.2K citations · Full text

Fast gapped-read alignment with Bowtie 2

Ben Langmead, Steven L. Salzberg · Nature Methods · 2012 · 61.1K citations

Life Sciences, Bioinformatics, Molecular Biology +11

STAR: ultrafast universal RNA-seq aligner

Alexander Dobin, Carrie Davis, Felix Schlesinger et al. · Bioinformatics · 2012 · 56.2K citations · Full text

Life Sciences, Bioinformatics, Molecular Biology +17

Visualizing Data using t-SNE

Laurens van der Maaten, Geoffrey E. Hinton · Journal of Machine Learning Research · 2008 · 35.7K citations

Computing, Data Science, Visualization +13

RSEM: accurate transcript quantification from RNA-Seq data with or without a reference genome

Bo Li, Colin N. Dewey · BMC Bioinformatics · 2011 · 23.4K citations · Full text

Life Sciences, Bioinformatics, Molecular Biology +15