BMC Genomics · 2017 · 41 citations · 45 references
Non-toxigenic C. diphtheriae ST5 and toxigenic ST8 strains have been endemic in Belarus both during and after the epidemic in 1990s. A high vaccine coverage has effectively controlled diphtheria in Belarus; however, non-toxigenic strains continue to circulate in the population. Recombination is an important evolutionary force in shaping the genomic diversity in C. diphtheriae. However, the relative role of recombination and mutations in diversification varies between different clones.
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MUSCLE: multiple sequence alignment with high accuracy and high throughput
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SPAdes: A New Genome Assembly Algorithm and Its Applications to Single-Cell Sequencing
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Bayesian Phylogenetics with BEAUti and the BEAST 1.7
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