Data in Brief · 2017 · 13 citations · 7 references
AgricultureBotanyPlant SciencesGene ExpressionSeed ScienceTranscriptomicsPlant TranscriptomicsSeed BiologySeed GenomicsSeed PhysiologySeed TranscriptomicsTranscript Sequence AnalysisEmbryogenesis TranscriptomicsMedicinal UsesRna Sequencing (Rna-seq)Seed Developmental GenomicsSeed Developmental StagesSeed Rna SequencingSeed Transcriptome AnnotationSeed Transcriptome Profiling
L.) has exceptional potential for commercial and pharmaceutical applications due to its delicious fruit and medicinal properties. Nevertheless, the molecular mechanism of mangosteen seed development is poorly understood. In this study, we performed transcriptomic analysis of four seed developmental stages; eight, ten, twelve and fourteen weeks after anthesis. Illumina HiSeq™ 4000 sequencer was used to generate raw data of approximately 68 Gb in size. From 451,495,326 raw reads, 406,143,756 clean reads were obtained. The raw data were uploaded to SRA database and the BioProject ID is PRJNA395504. These data provide the basis for further exploration and understanding of the molecular mechanism in mangosteen seed development.
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Cutadapt removes adapter sequences from high-throughput sequencing reads
Marcel Martin · EMBnet journal · 2011 · 35.8K citations · Full text
Full-length transcriptome assembly from RNA-Seq data without a reference genome
Manfred Grabherr, Brian J. Haas, Moran Yassour et al. · Nature Biotechnology · 2011 · 22.6K citations · Full text