The complete genome sequence and phylogenetic analysis of the mitochondrial DNA of the wood-decaying fungus Fomitopsis palustris

Trimmomatic: a flexible trimmer for Illumina sequence data

Anthony Bolger, Marc Lohse, Björn Usadel · Bioinformatics · 2014 · 69.7K citations · Full text

Life Sciences, Bioinformatics, Molecular Biology +13

The neighbor-joining method: a new method for reconstructing phylogenetic trees.

Naruya Saitou, M Nei · Molecular Biology and Evolution · 1987 · 60.5K citations · Full text

Life Sciences, Bioinformatics, Evolutionary Biology +17

SPAdes: A New Genome Assembly Algorithm and Its Applications to Single-Cell Sequencing

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Geneious Basic: An integrated and extendable desktop software platform for the organization and analysis of sequence data

Matthew D. Kearse, Richard Moir, Amy Wilson et al. · Bioinformatics · 2012 · 20.8K citations · Full text

Life Sciences, Bioinformatics, Biology +7

MAFFT: a novel method for rapid multiple sequence alignment based on fast Fourier transform

Kazutaka Katoh · Nucleic Acids Research · 2002 · 17.8K citations · Full text

Life Sciences, Bioinformatics, Biology +13