Molecular & Cellular Proteomics · 2017 · 16 citations · 97 references
Life SciencesBiologyDevelopmental BiologyCellular MetabolismEmbryologyProteomicsAmino Acid MetabolismComparative ProteomicsEgg ProteinsFunctional ProteomicsProteomic ProfilingQuantitative ProteomicsDevelopmental ProteomicsDormancy ProteomicsEmbryo ProteomicsGene Expression During DormancyInvertebrate ProteomicsLabel-free ProteomicsResting Egg DormancyResting Eggs
= 0.05). Proteins belonging to numerous putative functional pathways showed dramatic changes during dormancy. Most striking were changes in the mitochondria indicating an impeded metabolism. A comparison between the abundance of proteins and their corresponding transcript levels, revealed higher concordance for RE than for AM. Surprisingly, numerous highly abundant dormancy related proteins show corresponding high mRNA levels in metabolically inactive RE. As these mRNAs and proteins degrade at the time of exit from dormancy they may serve as a source of nucleotides and amino acids during the exit from dormancy. Because proteome analyses point to a similarity in functional pathways of hydrated RE and desiccated life forms, REs were dried. Similar hatching and reproductive rates were found for wet and dried REs, suggesting analogous pathways for long-term survival in wet or dry forms. Analysis by KEGG pathways revealed a few general strategies for dormancy, proposing an explanation for the low transcriptional similarity among dormancies across species, despite the resemblance in physiological phenotypes.
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Andromeda: A Peptide Search Engine Integrated into the MaxQuant Environment
Jürgen Cox, Nadin Neuhauser, Annette Michalski et al. · Journal of Proteome Research · 2011 · 5.9K citations · Full text
Jürgen Cox, Marco Y. Hein, Christian A. Luber et al. · Molecular & Cellular Proteomics · 2014 · 5.5K citations · Full text