International Journal of Infectious Diseases · 2017 · 31 citations · 40 references
All isolates from humans had spoligotype patterns that matched those observed in the cattle isolates, and all human isolates shared common ancestors with cattle in Baja California based on SNP analysis. This suggests that most human tuberculosis caused by M. bovis in Baja California is derived from M. bovis circulating in Baja California cattle. These results reinforce the importance of bovine tuberculosis surveillance and control in this region.
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The Sequence Alignment/Map format and SAMtools
Heng Li, Alec Wysoker, Tim Fennell et al. · Bioinformatics · 2009 · 64.7K citations · Full text
Fast and accurate short read alignment with Burrows–Wheeler transform
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The Genome Analysis Toolkit: A MapReduce framework for analyzing next-generation DNA sequencing data
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A framework for variation discovery and genotyping using next-generation DNA sequencing data
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Dna Sequencing, Sequencing, Medicine +14