Concepedia

Comparison of phenotypic and WGS-derived antimicrobial resistance profiles of Shigella sonnei isolated from cases of diarrhoeal disease in England and Wales, 2015

Zahra Sadouki, Martin Day, Michel Doumith, Marie Anne Chattaway, Timothy J. Dallman, Katie L. Hopkins, Richard Elson, Neil Woodford, Gauri Godbole, Claire Jenkins

Journal of Antimicrobial Chemotherapy · 2017 · 62 citations · 20 references

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Abstract

The use of WGS for routine public health surveillance is a reliable method for rapid detection of emerging AMR in isolates of S. sonnei.

References

20

Fast gapped-read alignment with Bowtie 2

Ben Langmead, Steven L. Salzberg · Nature Methods · 2012 · 58.3K citations · Full text

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Multidrug-resistant, extensively drug-resistant and pandrug-resistant bacteria: an international expert proposal for interim standard definitions for acquired resistance

Anna-Pelagia Magiorakos, Arjun Srinivasan, Roberta B. Carey et al. · Clinical Microbiology and Infection · 2011 · 13.3K citations

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Import and spread of extended-spectrum β-lactamase-producing Enterobacteriaceae by international travellers (COMBAT study): a prospective, multicentre cohort study

Maris S. Arcilla, Jarne M. van Hattem, Manon Haverkate et al. · The Lancet Infectious Diseases · 2016 · 448 citations · Full text

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Intercontinental dissemination of azithromycin-resistant shigellosis through sexual transmission: a cross-sectional study

Kate S. Baker, Timothy J. Dallman, Philip Ashton et al. · The Lancet Infectious Diseases · 2015 · 247 citations · Full text

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Tracking the establishment of local endemic populations of an emergent enteric pathogen

Kathryn E. Holt, Tran Vu Thieu Nga, Duy Pham Thanh et al. · Proceedings of the National Academy of Sciences · 2013 · 143 citations · Full text