Proceedings of the National Academy of Sciences · 2017 · 78 citations · 39 references
Life SciencesBiologyMicrobiologyMarine EcologyMarine SymbiosisMicrobial EcologyMicrobial BiogeochemistryOrigins Of LifeSulfur CycleSulfur MetabolismSymbiosisSymbiosis EvolutionBivalve EvolutionChemoautotrophic SymbiosesChemoautotrophic SymbiosisChemosynthetic SymbiosisEvolution Of Marine SymbiosisHydrothermal Vent SymbiosisSulfur-oxidizing BacteriaSulfur-oxidizing Symbiosis
Significance Certain marine invertebrates harbor chemosynthetic bacterial symbionts, giving them the remarkable ability to consume inorganic chemicals such as hydrogen sulfide (H 2 S) rather than organic matter as food. These chemosynthetic animals are found near geochemical (e.g., hydrothermal vents) or biological (e.g., decaying wood or large animal carcasses) sources of H 2 S on the seafloor. Although many such symbioses have been discovered, little is known about how or where they originated. Here, we demonstrate a new chemosynthetic symbiosis in the giant teredinid bivalve (shipworm) Kuphus polythalamia and show that this symbiosis arose in a wood-eating ancestor via the displacement of ancestral cellulolytic symbionts by sulfur-oxidizing invaders. Here, wood served as an evolutionary stepping stone for a dramatic transition from heterotrophy to chemoautotrophy.
39
The Sequence Alignment/Map format and SAMtools
Heng Li, Alec Wysoker, Tim Fennell et al. · Bioinformatics · 2009 · 67.5K citations · Full text
Versatile and open software for comparing large genomes
Stefan Kurtz, Adam M. Phillippy, Arthur L. Delcher et al. · Genome biology · 2004 · 5.8K citations · Full text
Nonhybrid, finished microbial genome assemblies from long-read SMRT sequencing data
Chen-Shan Chin, David H. Alexander, Patrick Marks et al. · Nature Methods · 2013 · 4.3K citations
BLAST Ring Image Generator (BRIG): simple prokaryote genome comparisons
Nabil-Fareed Alikhan, Nicola K. Petty, Nouri L. Ben Zakour et al. · BMC Genomics · 2011 · 3.4K citations · Full text