Virology · 2017 · 37 citations · 45 references
Life SciencesEvolutionary BiologyInfectious DiseasesComparative GenomicsMolecular VirologyVirologyViral EvolutionViral GeneticsViral GenomicsViral InfectionsVirus EpidemiologyVirus EvolutionComparative Viral PhylogeneticsReference Strain ComparisonsVariant Emergence StudiesViral Evolutionary DynamicsVirus Evolution AnalysisVirus Evolutionary DynamicsVirus Evolutionary Relationships
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The Sequence Alignment/Map format and SAMtools
Heng Li, Alec Wysoker, Tim Fennell et al. · Bioinformatics · 2009 · 67.5K citations · Full text
Fast gapped-read alignment with Bowtie 2
Ben Langmead, Steven L. Salzberg · Nature Methods · 2012 · 61.1K citations
Nonhybrid, finished microbial genome assemblies from long-read SMRT sequencing data
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