Concepedia

Molecular dynamics simulations of Zika virus NS3 helicase: Insights into RNA binding site activity

Melina Mottin, Rodolpho C. Braga, Roosevelt Alves da Silva, João H. M. da Silva, Alexander L. Perryman, Sean Ekins, Carolina Horta Andrade

Biochemical and Biophysical Research Communications · 2017 · 38 citations · 49 references

DOI

Concepts

References

49

VMD: Visual molecular dynamics

William Humphrey, Andrew Dalke, Klaus Schulten · Journal of Molecular Graphics · 1996 · 66.6K citations

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UCSF Chimera—A visualization system for exploratory research and analysis

Eric F. Pettersen, Thomas D. Goddard, Conrad C. Huang et al. · Journal of Computational Chemistry · 2004 · 47.8K citations

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Comparison of simple potential functions for simulating liquid water

William L. Jorgensen, Jayaraman Chandrasekhar, Jeffry D. Madura et al. · The Journal of Chemical Physics · 1983 · 42.1K citations

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The Protein Data Bank

Helen M. Berman · Nucleic Acids Research · 2000 · 39.8K citations

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GROMACS: High performance molecular simulations through multi-level parallelism from laptops to supercomputers

M Abraham, Teemu J. Murtola, Roland Schulz et al. · SoftwareX · 2015 · 26.8K citations · Full text

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