Concepedia

Transcriptomes of Ralstonia solanacearum during Root Colonization of Solanum commersonii

Marina Puigvert, Rodrigo Guarischi‐Sousa, Paola Zuluaga, Núria S. Coll, Alberto P. Macho, João Carlos Setúbal, Marc Valls

Frontiers in Plant Science · 2017 · 36 citations · 68 references

DOIFull text

Open access

Concepts

Abstract

can be studied when pathogen numbers are low by sequencing transcripts from infected tissue avoiding prokaryotic RNA enrichment.

References

68

Moderated estimation of fold change and dispersion for RNA-seq data with DESeq2

Michael I. Love, Wolfgang Huber, Simon Anders · Genome biology · 2014 · 100.5K citations · Full text

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Fast gapped-read alignment with Bowtie 2

Ben Langmead, Steven L. Salzberg · Nature Methods · 2012 · 61.1K citations

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HTSeq—a Python framework to work with high-throughput sequencing data

Simon Anders, Paul Theodor Pyl, Wolfgang Huber · Bioinformatics · 2014 · 22.7K citations · Full text

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Integrative Genomics Viewer (IGV): high-performance genomics data visualization and exploration

Helga Thorvaldsdóttir, James Robinson, Jill P. Mesirov · Briefings in Bioinformatics · 2012 · 9.8K citations · Full text

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Biology and Epidemiology of Bacterial Wilt Caused by Pseudomonas Solanacearum

Andrew Hayward · Annual Review of Phytopathology · 1991 · 1.5K citations

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