mSystems · 2017 · 2K citations · 20 references
Life SciencesMicrobiologyMicrobial EcologyMicrobiome ResearchSequence Analysis16S Ribosomal Ribonucleic Acid AnalysisDna SequencingMicrobial Community ProfilingTaxonomic Profiling16S Ribosomal Rna Amplicon Analysis16S Ribosomal Rna Amplicon Sequencing16S Ribosomal Rna Gene Sequencing16S Ribosomal Rna ProfilingAmplicon SequencingOperational Taxonomic Unit ClusteringOperational Taxonomic Unit DelineationOperational Taxonomic Unit Profiling
Deblur provides a rapid and sensitive means to assess ecological patterns driven by differentiation of closely related taxa. This algorithm provides a solution to the problem of identifying real ecological differences between taxa whose amplicons differ by a single base pair, is applicable in an automated fashion to large-scale sequencing data sets, and can integrate sequencing runs collected over time.
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Basic local alignment search tool
Stephen F. Altschul, Warren Gish, Webb Miller et al. · Journal of Molecular Biology · 1990 · 94.5K citations
DADA2: High-resolution sample inference from Illumina amplicon data
Benjamin J. Callahan, Paul J. McMurdie, Michael Rosen et al. · Nature Methods · 2016 · 36.3K citations
Search and clustering orders of magnitude faster than BLAST
R. C. Edgar · Bioinformatics · 2010 · 21.7K citations · Full text
UCHIME improves sensitivity and speed of chimera detection
R. C. Edgar, Brian J. Haas, José C. Clemente et al. · Bioinformatics · 2011 · 15.5K citations · Full text
Life Sciences, Biology, Microbiology +17
VSEARCH: a versatile open source tool for metagenomics
Torbjørn Rognes, Tomáš Flouri, Ben Nichols et al. · PeerJ · 2016 · 11K citations · Full text