Scientific Reports · 2017 · 134 citations · 40 references
MedicineGeneticsMolecular BiologyGene ExpressionGene RegulationTranscriptional RegulationAntifibrotic TherapyChronic Liver DiseaseHepatic FibrosisHepatic PathologyLiver DiseaseViral HepatitisDifferential Co-expression AnalysisFibrotic ChangeIntegrative Pathway AnalysisLiver Fibrosis ProgressionTissue Expression ProfilesViral Hepatitis FibrosisViral Hepatitis PathogenesisViral Hepatitis-associated Fibrosis
Although hepatitis B virus (HBV) infection is the leading cause of liver fibrosis (LF), the mechanisms underlying liver fibrotic progression remain unclear. Here, we investigated the gene expression profiles of HBV-related LF patients. Whole genome expression arrays were used to detect gene expression in liver biopsy samples from chronically HBV infected patients. Through integrative data analysis, we identified several pathways and key genes involved in the initiation and exacerbation of liver fibrosis. Weight gene co-expression analysis revealed that integrin subunit β-like 1 (ITGBL1) was a key regulator of fibrogenesis. Functional experiments demonstrated that ITGBL1 was an upstream regulator of LF via interactions with transforming growth factor β1. In summary, we investigated the gene expression profiles of HBV-related LF patients and identified a key regulator ITGBL1. Our findings provide a foundation for future studies of gene functions and promote the development of novel antifibrotic therapies.
40
Cytoscape: A Software Environment for Integrated Models of Biomolecular Interaction Networks
Paul Shannon, Andrew Markiel, Owen Ozier et al. · Genome Research · 2003 · 54.3K citations · Full text
WGCNA: an R package for weighted correlation network analysis
Peter Langfelder, Steve Horvath · BMC Bioinformatics · 2008 · 29.1K citations · Full text