Proceedings of the National Academy of Sciences · 2017 · 23 citations · 40 references
Life SciencesGeneticsMolecular BiologyCancer GeneticsCarcinogenesisDna RepairDna DamageDna Damage SignalingDna Repair DefectsMutation ProcessesMutational SignaturesTranslesion Dna SynthesisCancer Mutation Signature AnalysisCancer Mutation SignaturesDefective Dna Repair PathwaysMutational Signature AnalysisTranslesion Dna Synthesis DefectsTranslesion Synthesis In CancerTranslesion Synthesis RegulationYeast Mutagenesis
Significance Cancer cells often have defects in DNA repair and are killed effectively by drugs that damage DNA. However, surviving cells can acquire additional mutations after treatment with these genotoxic chemicals. Here we apply a simple model system to reveal synergy between specific DNA repair mutations and genotoxic drugs that occurs independently of fitness defects. Moreover, by analyzing the entire genome of a mutagenized cell population, we identify a signature of mutations that informs the mechanism of the translesion synthesis DNA damage tolerance pathway. Our work establishes a conceptual framework for predicting the mutational burden of cells surviving genotoxin treatment and adds to a growing list of examples supporting the utility of model organism mutation signature analysis for generating mechanistic insights.
40
The Sequence Alignment/Map format and SAMtools
Heng Li, Alec Wysoker, Tim Fennell et al. · Bioinformatics · 2009 · 67.5K citations · Full text
Fast and accurate short read alignment with Burrows–Wheeler transform
Heng Li, Richard Durbin · Bioinformatics · 2009 · 62.8K citations · Full text
Signatures of mutational processes in human cancer
Ludmil B. Alexandrov, Serena Nik‐Zainal, David C. Wedge et al. · Nature · 2013 · 10.1K citations · Full text
Medicine, Cancer Biology, Oncology +14
A global genetic interaction network maps a wiring diagram of cellular function
Michael Costanzo, Benjamin VanderSluis, Elizabeth N. Koch et al. · Science · 2016 · 1.4K citations · Full text