Journal of Biotechnology · 2017 · 31 citations · 33 references
Life SciencesBiotechnologyMicrobiologyGenetic EngineeringIndustrial MicrobiologyMicrobial GeneticsAmino Acid FermentationAmino Acid MetabolismAmino Acid ProductionMetabolic Engineering For FermentationMicrobial Enzyme ProductionMicrobial Metabolic EngineeringL-lysine FermentationLysine BiosynthesisLysine MetabolismOverproduction Of LysineProtein Secretion Engineering
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Trimmomatic: a flexible trimmer for Illumina sequence data
Anthony Bolger, Marc Lohse, Björn Usadel · Bioinformatics · 2014 · 69.7K citations · Full text
The Sequence Alignment/Map format and SAMtools
Heng Li, Alec Wysoker, Tim Fennell et al. · Bioinformatics · 2009 · 67.5K citations · Full text
A program for annotating and predicting the effects of single nucleotide polymorphisms, SnpEff
Pablo Cingolani, Adrian E. Platts, Le Lily Wang et al. · Fly · 2012 · 12.7K citations · Full text
Aligning sequence reads, clone sequences and assembly con*gs with BWA-MEM
Heng Li · arXiv (Cornell University) · 2014 · 5.8K citations · Full text