Genome · 2016 · 10 citations · 35 references
Life SciencesBiologyEntomologyInsect EcologyInsect SystematicsInsect TaxonomyBlack Fly BiologyInsect FamiliesInsect Morphological DiversityInsect PhylogeneticsTaxonomic ClassificationBlack Fly Species IdentificationBlack Fly SystematicsBlack Fly TaxonomyCryptic Species DiversityCryptic Species IdentificationDna BarcodingMorphospecies DelimitationSpecies-specific Identification
In this paper, the utility of a partial sequence of the COI gene, the DNA barcoding region, for the identification of species of black flies in the austral region was assessed. Twenty-eight morphospecies were analyzed: eight of the genus Austrosimulium (four species in the subgenus Austrosimulium s. str., three species in the subgenus Novaustrosimulium, and one species unassigned to subgenus), two of the genus Cnesia, eight of Gigantodax, three of Paracnephia, one of Paraustrosimulium, and six of Simulium (subgenera Morops, Nevermannia, and Pternaspatha). The neighbour-joining tree derived from the DNA barcode sequences grouped most specimens according to species or species groups recognized by morphotaxonomic studies. Intraspecific sequence divergences within morphologically distinct species ranged from 0% to 1.8%, while higher divergences (2%-4.2%) in certain species suggested the presence of cryptic diversity. The existence of well-defined groups within S. simile revealed the likely inclusion of cryptic diversity. DNA barcodes also showed that specimens identified as C. dissimilis, C. nr. pussilla, and C. ornata might be conspecific, suggesting possible synonymy. DNA barcoding combined with a sound morphotaxonomic framework would provide an effective approach for the identification of black flies in the region.
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MEGA6: Molecular Evolutionary Genetics Analysis Version 6.0
Koichiro Tamura, Glen Stecher, Daniel S. Peterson et al. · Molecular Biology and Evolution · 2013 · 47.9K citations · Full text
Biological identifications through DNA barcodes
Paul D. N. Hebert, Alina Cywinska, Shelley L. Ball et al. · Proceedings of the Royal Society B Biological Sciences · 2003 · 13.3K citations · Full text
Paul D. N. Hebert, Sujeevan Ratnasingham, Jeremy R. de Waard · Proceedings of the Royal Society B Biological Sciences · 2003 · 4.5K citations · Full text