Concepedia

Determining the cause of recurrent Clostridium difficile infection using whole genome sequencing

James Heng Chiak Sim, Cynthia Truong, Samuel S. Minot, Nick Greenfield, Indre Budvytiene, Akshar Lohith, Victoria Anikst, Nader Pourmand, Niaz Banaei

Diagnostic Microbiology and Infectious Disease · 2016 · 28 citations · 27 references

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27

The Sequence Alignment/Map format and SAMtools

Heng Li, Alec Wysoker, Tim Fennell et al. · Bioinformatics · 2009 · 67.5K citations · Full text

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A statistical framework for SNP calling, mutation discovery, association mapping and population genetical parameter estimation from sequencing data

Heng Li · Bioinformatics · 2011 · 7.4K citations · Full text

, , +16

VarScan 2: Somatic mutation and copy number alteration discovery in cancer by exome sequencing

Daniel C. Koboldt, Qunyuan Zhang, David E. Larson et al. · Genome Research · 2012 · 5.3K citations · Full text

, , +17

Mash: fast genome and metagenome distance estimation using MinHash

Brian Ondov, Todd J. Treangen, Páll Melsted et al. · Genome biology · 2016 · 3.6K citations · Full text

, , +15

Unipro UGENE: a unified bioinformatics toolkit

Konstantin Okonechnikov, Olga Golosova, Mikhail Fursov · Bioinformatics · 2012 · 3.2K citations · Full text

, , +17