Concepedia

Phylogenomics solves a long-standing evolutionary puzzle in the ciliate world: The subclass Peritrichia is monophyletic

Eleni Gentekaki, Martin Kolísko, Yingchun Gong, Denis H. Lynn

Molecular Phylogenetics and Evolution · 2016 · 82 citations · 32 references

DOI

Concepts

References

32

RAxML-VI-HPC: maximum likelihood-based phylogenetic analyses with thousands of taxa and mixed models

Alexandros Stamatakis · Bioinformatics · 2006 · 15.9K citations · Full text

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De novo transcript sequence reconstruction from RNA-seq using the Trinity platform for reference generation and analysis

Brian J. Haas, Alexie Papanicolaou, Moran Yassour et al. · Nature Protocols · 2013 · 9.1K citations · Full text

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An Improved General Amino Acid Replacement Matrix

Si Quang Le, Olivier Gascuel · Molecular Biology and Evolution · 2008 · 3.3K citations · Full text

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Relationships between gene trees and species trees.

Pekka Pamilo, M Nei · Molecular Biology and Evolution · 1988 · 1.7K citations · Full text

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PhyloBayes 3: a Bayesian software package for phylogenetic reconstruction and molecular dating

Nicolas Lartillot, Thomas Lepage, Samuel Blanquart · Bioinformatics · 2009 · 1.4K citations · Full text

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