Concepedia

Deciphering the Pathobiome: Intra- and Interkingdom Interactions Involving the Pathogen Erysiphe alphitoides

Boris Jakuschkin, Virgil Fiévet, Loïc Schwaller, Thomas Fort, Cécile Robin, Corinne Vacher

Microbial Ecology · 2016 · 113 citations · 42 references

DOI

Concepts

References

42

R: A Language and Environment for Statistical Computing

R Core Team · 2000 · 353K citations · Full text

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Basic local alignment search tool

Stephen F. Altschul, Warren Gish, Webb Miller et al. · Journal of Molecular Biology · 1990 · 94.5K citations

, , +3

Search and clustering orders of magnitude faster than BLAST

R. C. Edgar · Bioinformatics · 2010 · 21.7K citations · Full text

, , +14

Naive Bayesian Classifier for Rapid Assignment of rRNA Sequences into the New Bacterial Taxonomy

Qiong Wang, George M Garrity, James M. Tiedje et al. · Applied and Environmental Microbiology · 2007 · 20.5K citations · Full text

, , +17

UPARSE: highly accurate OTU sequences from microbial amplicon reads

R. C. Edgar · Nature Methods · 2013 · 17.3K citations

, , +14