FILTUS: a desktop GUI for fast and efficient detection of disease-causing variants, including a novel autozygosity detector

Abstract

UNLABELLED: FILTUS is a stand-alone tool for working with annotated variant files, e.g. when searching for variants causing Mendelian disease. Very flexible in terms of input file formats, FILTUS offers efficient filtering and a range of downstream utilities, including statistical analysis of gene sharing patterns, detection of de novo mutations in trios, quality control plots and autozygosity mapping. The autozygosity mapping is based on a hidden Markov model and enables accurate detection of autozygous regions directly from exome-scale variant files. AVAILABILITY AND IMPLEMENTATION: FILTUS is written in Python and runs on Windows, Mac and Linux. Binaries and source code are freely available at http://folk.uio.no/magnusv/filtus.html and on GitHub: https://github.com/magnusdv/filtus Automatic installation is available via PyPI (e.g. pip install filtus). CONTACT: magnusdv@medisin.uio.no SUPPLEMENTARY INFORMATION: Supplementary data are available at Bioinformatics online.