IntSplice: prediction of the splicing consequences of intronic single-nucleotide variations in the human genome

LIBSVM

Chih-Chung Chang, Chih‐Jen Lin · ACM Transactions on Intelligent Systems and Technology · 2011 · 41.1K citations

Data Classification, Support Vector Machine, Classification Method +15

Mfold web server for nucleic acid folding and hybridization prediction

Michael Zuker · Nucleic Acids Research · 2003 · 13.4K citations · Full text

Web Server, Dna Sequencing, Engineering +14

TopHat: discovering splice junctions with RNA-Seq

Cole Trapnell, Lior Pachter, Steven L. Salzberg · Bioinformatics · 2009 · 12K citations · Full text

Alternative isoform regulation in human tissue transcriptomes

Eric T. Wang, Rickard Sandberg, Shujun Luo et al. · Nature · 2008 · 5.2K citations · Full text

Gene Regulation, Systems Biology, Medicine +4

Deep surveying of alternative splicing complexity in the human transcriptome by high-throughput sequencing

Qun Pan, Ofer Shai, Leo J. Lee et al. · Nature Genetics · 2008 · 3.9K citations

Long-read Sequencing, Functional Genomics, Deep Surveying +15