Concepedia

Active DNA demethylation at enhancers during the vertebrate phylotypic period

Ozren Bogdanović, Arne H. Smits, Elisa de la Calle‐Mustienes, Juan J. Tena, Ethan Ford, Ruth M. Williams, Upeka Senanayake, Matthew D. Schultz, Saartje Hontelez, Ila van Kruijsbergen,

Nature Genetics · 2016 · 267 citations · 73 references

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73

Systematic and integrative analysis of large gene lists using DAVID bioinformatics resources

Da Wei Huang, Brad T. Sherman, Richard A. Lempicki · Nature Protocols · 2008 · 37.4K citations

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BEDTools: a flexible suite of utilities for comparing genomic features

Aaron R. Quinlan, Ira M. Hall · Bioinformatics · 2010 · 30.4K citations · Full text

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Ultrafast and memory-efficient alignment of short DNA sequences to the human genome

Ben Langmead, Cole Trapnell, Mihai Pop et al. · Genome biology · 2009 · 23K citations · Full text

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Differential expression analysis for sequence count data

Simon Anders, Wolfgang Huber · Genome biology · 2010 · 16.4K citations · Full text

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MaxQuant enables high peptide identification rates, individualized p.p.b.-range mass accuracies and proteome-wide protein quantification

Jürgen Cox, Matthias Mann · Nature Biotechnology · 2008 · 15.7K citations

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