Laser Physics Letters · 2015 · 11 citations · 30 references
Natural SciencesBiomedical EngineeringOncologyBiomedical Signal ProcessingSpectroscopic AnalysisSpectroscopyBiomarkers In PathologyCancer BiomarkersOptical SpectroscopyRaman SpectroscopySpectral Data ProcessingMolecular Diagnosis From Tissue SamplesRaman Data AnalysisRaman SpectraSerum BiomarkersSupport Vector ClassificationSupport Vector Machine ClassificationSurface-enhanced Raman Spectroscopy
Surface enhanced Raman spectroscopy (SERS) has been recognized as an effective tool for the analysis of tissue samples and biofluids. In this work, a total of 27 spectral parameters were chosen and compared using SERS. Four parameters with the highest prediction ability were selected for further support vector machine (SVM) analysis. As a comparison, principal component analysis (PCA) was used on the same dataset for feature extraction. SVM was used with the above two data reduction methods separately to differentiate colon cancer and the control groups. Serum taken from 52 colon cancer patients and 60 healthy volunteers were collected and tested by SERS. The accuracy for Parameter-SVM was 95.0%, the sensitivity was 96.2%, and the specificity was 95.5%, which was much higher than the results using only one parameter, while for PCA-SVM, the results are 93.3%, 92.3%, and 92.9%, respectively. These results demonstrate that the SERS analysis method can be used to identify serum differences between colon cancer patients and normal people.
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R: A Language and Environment for Statistical Computing
R Core Team · 2000 · 353K citations · Full text
Natural Sciences, Computer Science, Statistical Computing +10
pROC: an open-source package for R and S+ to analyze and compare ROC curves
Xavier Robin, Natacha Turck, Alexandre Hainard et al. · BMC Bioinformatics · 2011 · 14K citations · Full text
Rebecca L. Siegel, Deepa Naishadham, Ahmedin Jemal · CA A Cancer Journal for Clinicians · 2013 · 11.9K citations · Full text
Single Molecule Detection Using Surface-Enhanced Raman Scattering (SERS)
Katrin Kneipp, Yang Wang, Harald Kneipp et al. · Physical Review Letters · 1997 · 6.7K citations
Natural Sciences, Chemistry, Physics +17
James R. Egner · JAMA · 2010 · 6.1K citations