Genomic and proteomic evidence supporting the division of the plant pathogen Ralstonia solanacearum into three species

MUSCLE: multiple sequence alignment with high accuracy and high throughput

R. C. Edgar · Nucleic Acids Research · 2004 · 45.3K citations · Full text

Genetics, Molecular Biology, Genomics +17

MrBayes 3: Bayesian phylogenetic inference under mixed models

Fredrik Ronquist, John P. Huelsenbeck · Bioinformatics · 2003 · 29.1K citations · Full text

Biology, Phylogenetics, Molecular Ecology +14

BLAST+: architecture and applications

Christiam Camacho, George Coulouris, Vahram Avagyan et al. · BMC Bioinformatics · 2009 · 21.8K citations · Full text

Application of Phylogenetic Networks in Evolutionary Studies

Daniel H. Huson, David Bryant · Molecular Biology and Evolution · 2005 · 8.9K citations · Full text

Biology, Split Networks, Phylogenetics +15

Genome sequence-based species delimitation with confidence intervals and improved distance functions

Jan P. Meier‐Kolthoff, Alexander F. Auch, Hans-Peter Klenk et al. · BMC Bioinformatics · 2013 · 6.4K citations · Full text