Concepedia

Adult mouse cortical cell taxonomy revealed by single cell transcriptomics

Bosiljka Tasic, Vilas Menon, Thuc Nghi Nguyen, Tae Kyung Kim, Tim Jarsky, Zizhen Yao, Boaz P. Levi, Lucas T. Gray, Staci A. Sorensen, Tim Dolbeare,

Nature Neuroscience · 2016 · 2K citations · 73 references

Concepts

Life SciencesCell BiologyNeuroscienceCellular NeuroscienceDevelopmental NeuroscienceTranscriptomicsCell Type AnnotationCell-type-specific TranscriptomicsSingle-cell AnalysisSingle-cell ClusteringSingle-cell Rna Sequencing AnalysisSingle-cell TranscriptomicsCell Cortical IdentityCell Type TaxonomySingle-cell Gene Expression ProfilingSingle-cell Rna SequencingSingle-cell Transcriptomics In Neuroscience

References

73

limma powers differential expression analyses for RNA-sequencing and microarray studies

Matthew E. Ritchie, Belinda Phipson, Di Wu et al. · Nucleic Acids Research · 2015 · 43K citations · Full text

Life Sciences, Bioinformatics, Molecular Biology +17

WGCNA: an R package for weighted correlation network analysis

Peter Langfelder, Steve Horvath · BMC Bioinformatics · 2008 · 29.1K citations · Full text

Life Sciences, Bioinformatics, Systems Biology +15

RSEM: accurate transcript quantification from RNA-Seq data with or without a reference genome

Bo Li, Colin N. Dewey · BMC Bioinformatics · 2011 · 23.4K citations · Full text

Life Sciences, Bioinformatics, Molecular Biology +15

Ultrafast and memory-efficient alignment of short DNA sequences to the human genome

Ben Langmead, Cole Trapnell, Mihai Pop et al. · Genome biology · 2009 · 23K citations · Full text

Life Sciences, Bioinformatics, High-performance Computing +15

Differential expression analysis for sequence count data

Simon Anders, Wolfgang Huber · Genome biology · 2010 · 16.4K citations · Full text

Life Sciences, Bioinformatics, Biostatistics +15