High-throughput sequencing and morphology perform equally well for benthic monitoring of marine ecosystems

Introducing mothur: Open-Source, Platform-Independent, Community-Supported Software for Describing and Comparing Microbial Communities

Patrick D. Schloss, Sarah L. Westcott, Thomas Ryabin et al. · Applied and Environmental Microbiology · 2009 · 21.3K citations · Full text

New Algorithms and Methods to Estimate Maximum-Likelihood Phylogenies: Assessing the Performance of PhyML 3.0

Stéphane Guindon, Jean-François Dufayard, Vincent Lefort et al. · Systematic Biology · 2010 · 18.4K citations · Full text

UCHIME improves sensitivity and speed of chimera detection

R. C. Edgar, Brian J. Haas, José C. Clemente et al. · Bioinformatics · 2011 · 15.2K citations · Full text

Waste Not, Want Not: Why Rarefying Microbiome Data Is Inadmissible

Paul J. McMurdie, Susan Holmes · PLoS Computational Biology · 2014 · 3K citations · Full text

Microbial Diversity, Microbiome Biology, R Package +14

The Protist Ribosomal Reference database (PR2): a catalog of unicellular eukaryote Small Sub-Unit rRNA sequences with curated taxonomy

Laure Guillou, Dipankar Bachar, Stéphane Audic et al. · Nucleic Acids Research · 2012 · 2.3K citations · Full text